SARS-CoV2 (COVID-19) Genomic Surveillance: Bharat
SARS-CoV-2 (COVID-19) Genomic Surveillance: Bharat
Number of Genomic Records: 242607
Statewise SARS-CoV-2 Sequences
Andaman and Nicobar: 127 Telangana: 19697 Andhra Pradesh: 11511 Arunachal Pradesh: 450 Assam: 3969 Bihar: 829 Chandigarh: 771 Chhattisgarh: 3203 Dadra and Nagar Haveli and Daman and Diu: 74 Delhi: 16710 Goa: 1182 Gujarat: 15000 Haryana: 2912 Himachal Pradesh: 2707 Jharkhand: 998 Karnataka: 33306 Kerala: 7987 Madhya Pradesh: 3948 Maharashtra: 33765 Manipur: 3671 Meghalaya: 339 Mizoram: 5340 Nagaland: 424 Orissa: 6644 Puducherry: 1790 Punjab: 3925 Rajasthan: 14036 Sikkim: 1373 Tamil Nadu: 18679 Tripura: 636 Uttar Pradesh: 2685 Uttaranchal: 1250 West Bengal: 17917 Lakshadweep: 122 Jammu and Kashmir: 3047 Ladakh: 968 20000+ 15000-19999 10000-14999 5000-9999 1000-4999 100-999 0-99
Gender Distribution
Age Group Distribution
SARS-CoV-2 Different Clade: Monthly Distribution

Monthly GISAID Clade

Monthly Nextstrain Clade

Monthly Pangolin Clade

Monthly Group Clade

SARS-CoV-2 Genome Variants References Table
DASHBOARD
Sr No. Lineage Group Lineage Name
21 JN.1 JN.1, JN.1.4, JN.1.1.3, JN.1.10, JN.1.3, JN.1.6, JN.1.1.1, JN.1.1, JN.1.8, JN.1.2, JN.1.5, JN.1.9, JN.1.11, JN.1.19, JN.1.11.1, JN.1.18, JN.1.4.2, JN.1.20, JN.1.9.1, JN.1.15, JN.1.22, JN.1.16, JN.1.1.5, JN.1.25.1, JN.1.25, JN.1.13, JN.1.7.2, JN.1.1.6, JN.1.1.7, JN.1.16.1, JN.1.18.1, JN.1.28, JN.1.28.1, JN.1.29, JN.1.30, JN.1.30.1, JN.1.32, JN.1.33, JN.1.37, JN.1.38, JN.1.39, JN.1.4.4, JN.1.4.5, JN.1.4.7, JN.1.40, JN.1.43.1, JN.1.44, JN.1.47, JN.1.48, JN.1.48.1, JN.1.8.3, JN.1.9.2, KU.1, KU.2, KZ.1, KZ.1.1, LB.1, LC.1, JN.1.6.1, JN.1.1.10, JN.1.1.8, JN.1.18.3, JN.1.34, JN.1.39.2, JN.1.39.3, JN.1.42, JN.1.44.1, JN.1.46, JN.1.48.2, JN.1.49, JN.1.49.1, JN.1.49.2, JN.1.52, JN.1.53, JN.1.57, JN.1.58, JN.1.60, JN.1.61, JN.1.63.1, KQ.1, LB.1.2, LB.1.2.1, LB.1.3, LB.1.4, LM.1, LQ.1
22 Kappa B.1.617.1
23 KP.x KP.2, KP.1.1, KP.1, KP.1.1.1, KP.1.2, KP.2.1, KP.2.2, KP.2.3, KP.3, KP.4, KP.4.1, KP.4.2, KP.1.1.3, KP.1.1.5, KP.2.16, KP.2.4, KP.2.5, KP.2.7, KP.3.1, KP.3.1.4, KP.3.2, KP.3.2.1, KP.4.1.1, KP.4.2.1, KP.5, KP.2.15
24 Omicron B.1.1.529, XAB, XAH, XE, XN, XAG, XAP, XAS, XAQ, XAM, XM, XU, XBH, XBF, XAY.2, XBN, XBC.1.1, XBF.8, XBM, XBF.5, BC.1, XBL.1, XAY.2.3, XCG, XBC.1.1.2, BA.2.86.1, BA.2.86, JN.2, JN.6, EW.2, XCW, XDA, XDB, XDD, XDK, JN.12, BA.2.87, XDK.1
25 Other A, A.1, A.19, A.2, A.23.1, A.27, A.29, AE.3, AE.4, B, B.1, B.11, B.1.1, B.1.1.10, B.1.1.101, B.1.111, B.1.1.112, B.1.1.117, B.1.113, B.1.1.132, B.1.116, B.1.1.161, B.1.1.168, B.1.1.174, B.1.1.189, B.1.1.201, B.1.1.214, B.1.1.216, B.1.1.220, B.1.1.222, B.1.1.25, B.1.1.27, B.1.1.273, B.1.1.274, B.1.1.282, B.1.1.285, B.1.1.306, B.1.1.312, B.1.1.317, B.1.1.318, B.1.1.326, B.1.1.339, B.1.1.353, B.1.1.354, B.1.1.357, B.1.1.359, B.1.1.368, B.1.137, B.1.1.397, B.1.1.416, B.1.1.420, B.1.143, B.1.1.441, B.1.145, B.1.1.45, B.1.1.46, B.1.1.487, B.1.1.523, B.1.1.525, B.1.1.526, B.1.153, B.1.1.53, B.1.1.54, B.1.1.57, B.1.1.63, B.1.170, B.1.177, B.1.177.16, B.1.177.19, B.1.177.4, B.1.177.7, B.1.177.87, B.1.179, B.1.1.8, B.1.182, B.1.184, B.1.192, B.1.195, B.1.2, B.1.201, B.1.206, B.1.210, B.1.214.3, B.1.222, B.1.234, B.1.238, B.1.239, B.1.241, B.1.243, B.1.247, B.1.250, B.1.258, B.1.258.20, B.1.260, B.1.36, B.1.36.10, B.1.36.16, B.1.36.18, B.1.36.19, B.1.36.22, B.1.36.24, B.1.36.29, B.1.36.31, B.1.36.35, B.1.36.38, B.1.36.39, B.1.36.7, B.1.36.8, B.1.369, B.1.378, B.1.380, B.1.384, B.1.390, B.1.397, B.1.398, B.1.399, B.1.401, B.1.428, B.1.436, B.1.441, B.1.459, B.1.465, B.1.466.1, B.1.466.2, B.1.470, B.1.473, B.1.523, B.1.524, B.1.533, B.1.537, B.1.538, B.1.540, B.1.548, B.1.551, B.1.558, B.1.560, B.1.578, B.1.602, B.1.609, B.1.617, B.1.617.3, B.1.618, B.1.620, B.1.633, B.1.640.2, B.1.78, B.1.81, B.1.91, B.23, B.26, B.3, B.4, B.40, B.4.7, B.6, B.6.1, B.6.6, C.17, C.36, C.36.3, C.38, L.3, R.1, B.1.1.172, B.1.118, B.1.1.462, B.1.1.1, B.1.1.261, B.1.159, B.1.36.17, B.1.1.83, B.1.199, XC, B.55, B.1.22, B.1.240, B.1.1.164, B.1.1.28, B.1.1.166, B.1.1.89, B.1.1.355, AV.1, B.1.564, B.1.124, B.1.1.142, B.1.395, B.1.215, B.1.1.122, B.1.104, B.1.1.59, B.1.1.294, B.1.1.38, B.1.466, B.1.1.135, B.1.1.254, B.1.214, B.1.468, B.1.518, B.1.237, B.1.1.33
26 XBB XBB, XBB.1, XBB.2, XBB.3, XBB.4, XBB.5, XBB.3.1, XBB.1.3, XBB.1.4, XBB.1.5, XBB.1.1, XBB.1.9, XBB.1.2, XBB.1.9.1, XBB.2.1, XBL, XBB.1.9.2, XBB.1.11.1, XBB.2.4, XBB.1.5.5, XBB.1.5.8, XBB.1.5.7, XBB.1.5.4, XBB.1.11, XBP, XBB.1.13, XBB.1.5.1, EG.1, XBB.1.5.15, XBB.1.5.39, XBB.1.5.18, XBB.1.5.12, XBB.1.5.3, XBB.1.5.32, XBB.1.22.1, XBB.1.5.13, XBB.1.22, XBB.1.5.23, XBB.1.5.28, XBB.1.5.33, XBB.1.5.25, XBB.1.22.2, XBB.1.5.37, FD.2, XBB.1.5.38, XBB.1.5.16, XBB.1.5.14, XBB.1.5.24, XBB.6, XBB.2.8, XBB.8, XBB.1.5.11, XBB.2.7.1, EL.1, XBB.1.8, XBB.1.12, XBB.1.24, XBB.1.17.1, XBB.1.5.17, XBB.2.7, XBB.1.19.1, XBB.1.5.31, XBB.2.5, XBB.1.19, XBB.3.3, XBB.1.5.20, XBB.2.6, XBB.1.28, XBB.1.15, XBB.1.27, XBB.1.5.21, XBB.1.9.4, XBB.1.9.5, XBB.1.7, XBB.1.5.36, XBB.1.5.26, XBB.3.2, XBB.1.9.3, FD.1, EU.1.1, XBB.1.5.45, EG.2, XBB.1.5.67, EG.5, GE.1, XBB.1.30, FL.3.3, GA.3, FT.1, XBB.1.5.57, FY.1, XBB.1.34, XBB.9, FL.12, FL.4, XBB.1.5.47, XBB.1.39, EG.4, FL.1, XBB.1.5.54, XBB.1.36, FL.5, XBB.1.5.42, XBB.1.5.43, XBB.1.24.1, XBB.1.5.46, FL.10, XBB.1.5.48, FL.2.1, FL.8, FL.2, XBB.1.5.52, XBB.1.35, EU.1.1.1, XBB.3.4, XBB.1.5.56, FL.1.3, XBB.1.37.1, XBB.1.5.65, FD.4, FY.2, XBB.1.5.51, EG.5.1, EK.3, XBB.1.5.30, EG.1.2, FE.1.1, XBB.1.5.87, GJ.1.1, XBB.1.31, FY.4.1, GS.1, XBB.2.10, XBB.1.5.75, GR.1, XBB.1.34.2, XBB.1.5.66, FP.2, FP.3, XBB.1.45.1, XBB.2.12, FY.5, XBB.2.11, XBB.2.11.1, XBB.1.5.76, GF.1, EG.6, XBB.2.6.2, EG.5.2, FL.1.5.1, GJ.1, XBB.1.43.1, XBB.1.5.80, FL.13, XBB.1.42, XBB.1.43, FL.17, FP.4, FY.1.1, XBB.1.5.2, FL.4.1, FP.2.1, XBB.1.5.72, FL.15, EG.5.1.1, XBB.1.44, GK.1, XBB.1.5.91, GD.2, EG.1.6, FD.4.1, FL.4.7, XBB.1.5.59, FL.22, GJ.1.2, FL.23, FL.26, XBB.1.5.96, XBB.1.5.99, GK.1.3, GD.3, GZ.1, EG.12, FL.13.2, GW.4, XBB.1.31.2, HH.2, GA.6, GJ.4, XBB.1.19.2, HH.1, GJ.3, FL.13.3, XBB.1.49, HK.2, FY.3.1, FL.31, EG.13, GE.1.1, FL.4.11, GS.2, EG.14, FL.2.6, XCH.1, GM.3, JG.3, GW.5.1.1, FL.4.8, GW.5, HK.3, GE.1.3, EG.5.1.6, HV.1, GW.5.1, XBB.1.41.1, GK.1.1, EG.5.1.8, HK.3.1, JD.1.1, EG.5.1.15, FL.13.4, FL.2.7, FL.39, FY.9, GA.7, GJ.6, GW.5.3.1, HH.3, HH.4, HH.6, HH.7, HK.29, HK.3.5, HN.5, HV.1.11, JK.1, KB.3, XBB.1.5.110, XBB.1.5.95, JD.1.1.1, XBB.1.28.1, XBB.1.5.73, HN.3, FY.3
27 XBB.1.16 XBB.1.16, XBB.1.16.1, XBB.1.16.5, XBB.1.16.2, FU.1, FU.2, XBB.1.16.3, XBB.1.16.4, XBB.1.16.6, XBB.1.16.8, XBB.1.16.11, XBB.1.16.10, XBB.1.16.7, XBB.1.16.20, GY.8, GY.6, XBB.1.16.22, FU.5, XBB.1.16.21, XBB.1.16.17, GY.2, XBB.1.16.14, FU.4, XBB.1.16.16, HF.1, FL.18, FU.3, XBB.1.16.19, XBB.1.16.13, GY.4, XBB.1.16.18, XBB.1.16.12, FU.3.1, XBB.1.16.9, XBB.1.16.24, XBB.1.16.15, JM.2, JF.1, FU.1.1, JF.1.1, JG.3.2, XBB.1.16.25, XBB.1.16.26, XBB.1.16.31, GY.3, XBB.1.16.23
28 XBB.2.3 XBB.2.3, XBB.2.3.2, XBB.2.3.1, XBB.2.3.5, XBB.2.3.3, XBB.2.3.4, XBB.2.3.11, XBB.2.3.7, XBB.2.3.9, XBB.2.3.6, XBB.2.3.8, XBB.2.3.10, XBB.2.3.12, XBB.2.3.14, XBB.2.3.13, JE.1, JE.1.1, JE.1.1.1, JY.1, JY.1.1, XBB.2.3.18, XBB.2.3.19, XBB.2.3.20
29 Zeta P.2

Showing 21 to 29 of 29 entries

SARS-CoV-2 Genome Variants Study References

Nextstrain Clade

19A (B) 20A (B.1) 19B (A) 20B (B.1.1) 21A (Delta, B.1.617.2) 20C 21H (Mu, B.1.621) 21D (Eta, B.1.525) 21B (Kappa, B.1.617.1) 20E (EU1, B.1.177) 21M (Omicron, B.1.1.529) 21E (Theta, P.3) 20J (Gamma, P.1) 20I (Alpha, B.1.1.7) 20F (D.2) 20D (B.1.1.1) 21I (Delta) 21J (Delta)21F (Iota, B.1.526)21C (Epsilon, B.1.427/429)20H (Beta, B.1.351)20G (B.1.2)21K (Omicron, BA.1)21L (Omicron, BA.2)21G (Lambda, C.37)23I (BA.2.86)22D (BA.2.75)22F (XBB)22C (BA.2.12.1)22B (BA.5)22A (BA.4)24A (JN.1)23C (CH.1.1)23A (XBB.1.5)23B (XBB.1.16)23D (XBB.1.9)23E (XBB.2.3)22E (BQ.1)24B (JN.1.11.1)23G (XBB.1.5.70)23F (EG.5.1)23H (HK.3)

Source: Nextstrain Clade (https://nextstrain.org/)

SARS-CoV-2 Genome Protein

SARS-CoV-2 Genome Protein


Source: SARS-CoV-2 Genome Protein (RCSB.org/covid19)

Our Team
Name Position  
Dr Pratip Shil Principal investigator (PI)
Dr Sarah S Cherian Co-investigator (Co-I)
Dr Varsha A Potdar Co-investigator (Co-I)
Mr Santoshkumar Jadhav Sr Statistician Statistical Data Analysis
     
Dr Nitin M Atre Project Research Scientist-V Dashboard Design, Development and Programmer
Mr Ashokkumar J Project Technical Support-II Bioinformatics Data Analysis
Acknowledgment
This project is funded by Indian Council of Medical Research (ICMR), New Delhi (Project ID: 2021-6366)

We are really thankful to all our data sources
  • Indian SARS-CoV-2 Genomics Consortium (INSACOG)
  • GISAID
  • Nextstrain
  • Pangolin
We are also thankful to Director, ICMR National Institute of Virology, Pune, Maharashtra, Bharat